feat: project-scoped file tools — grep, stat, syntax_check, offset reads

Add five project-scoped tools (user-level, no admin required):
  project_file_read — read with 1-based offset for paging large files
  project_file_list — list with sizes + timestamps
  file_stat         — size, modified time, line count / entry count
  file_grep         — regex search with context lines, up to 50 matches
  file_syntax_check — py_compile (.py) or json.loads (.json)

Also add offset support to existing file_read (system scope).
Rename "Files" tool category to "System Files"; add "Project Files" category.
Project scope restricted to Cortex_and_Inara_dev/ project root.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

cortex/tools/__init__.py

@@ -30,7 +30,18 @@ from tools.ae_knowledge import (
     journal_entry_prepend as _ae_journal_entry_prepend,
 )
 from tools.ae_tasks import task_list as _ae_task_list
-from tools.files import file_read as _file_read, file_list as _file_list, file_write as _file_write, session_search as _session_search, session_read as _session_read
+from tools.files import (
+    project_file_read  as _project_file_read,
+    project_file_list  as _project_file_list,
+    file_stat          as _file_stat,
+    file_grep          as _file_grep,
+    file_syntax_check  as _file_syntax_check,
+    file_read          as _file_read,
+    file_list          as _file_list,
+    file_write         as _file_write,
+    session_read       as _session_read,
+    session_search     as _session_search,
+)
 from tools.system import (
     shell_exec      as _shell_exec,
     claude_allow_dir as _claude_allow_dir,
@@ -97,7 +108,8 @@ import tools.homeassistant as _mod_homeassistant
 
 TOOL_CATEGORIES: dict[str, list[str]] = {
     "Web":              ["web_search", "http_fetch", "web_read", "http_post"],
-    "Files":            ["file_read", "file_list", "file_write", "session_read", "session_search"],
+    "Project Files":    ["project_file_read", "project_file_list", "file_stat", "file_grep", "file_syntax_check"],
+    "System Files":     ["file_read", "file_list", "file_write", "session_read", "session_search"],
     "Shell":            ["shell_exec", "claude_allow_dir"],
     "System":           ["cortex_restart", "cortex_logs", "cortex_status", "cortex_update"],
     "Tasks":            ["task_list", "task_create", "task_update", "task_complete"],
@@ -135,6 +147,11 @@ _CALLABLES: dict[str, callable] = {
     "ae_journal_entry_append":   _ae_journal_entry_append,
     "ae_journal_entry_prepend":  _ae_journal_entry_prepend,
     "ae_task_list":              _ae_task_list,
+    "project_file_read":         _project_file_read,
+    "project_file_list":         _project_file_list,
+    "file_stat":                 _file_stat,
+    "file_grep":                 _file_grep,
+    "file_syntax_check":         _file_syntax_check,
     "file_read":                 _file_read,
     "file_list":                 _file_list,
     "file_write":                _file_write,

cortex/tools/files.py

@@ -1,23 +1,44 @@
 """
-File read/write/search tools — restricted to known-safe directory roots.
+File read/write/search tools — two access scopes.
 
-Lets the orchestrator read local files (documentation, notes, config references)
+  Project scope (no admin required):
-and search past session logs without exposing arbitrary filesystem access.
+    project_file_read   — read a file with optional line-range (offset)
-All paths are resolved and checked against an allowlist of roots before any
+    project_file_list   — list a directory with sizes + timestamps
-read or write is performed.
+    file_stat           — size, modified time, line count for a path
+    file_grep           — regex search with context lines; up to 50 matches
+    file_syntax_check   — py_compile (.py) or json.loads (.json) check
+
+  System scope (admin-only):
+    file_read           — read a file from ~/agents_sync/, ~/OSIT_dev/, etc.
+    file_list           — list a directory (same roots)
+    file_write          — write/append (~/agents_sync/ + Cortex home/)
+
+  Session tools (user-level, persona-isolated):
+    session_read        — read a session log by date
+    session_search      — keyword search across session logs
+
+All project-scope tools are restricted to the Cortex project root:
+  ~/agents_sync/projects/Cortex_and_Inara_dev/
 """
 
 import asyncio
+import json
 import logging
 import re
+import subprocess
+from datetime import datetime
 from pathlib import Path
 
 from google.genai import types
 
 logger = logging.getLogger(__name__)
 
-# Directories the orchestrator is allowed to read from.
+# ── Access roots ──────────────────────────────────────────────────────────────
-# Paths are resolved (symlinks followed, ~ expanded) at import time.
+
+# Project root: two levels up from cortex/tools/files.py → Cortex_and_Inara_dev/
+_PROJECT_ROOT: Path = Path(__file__).parent.parent.parent.resolve()
+
+# System-wide read roots
 def _build_allowed_roots() -> list[Path]:
     roots = [
         Path.home() / "agents_sync",
@@ -34,88 +55,24 @@ def _build_allowed_roots() -> list[Path]:
 
 _ALLOWED_ROOTS: list[Path] = _build_allowed_roots()
 
-# Hard cap on file size to prevent accidental context blowout
+# Write is tighter
-_MAX_BYTES = 50_000   # ~50 KB
+_WRITE_ROOTS: list[Path] = [Path.home() / "agents_sync"]
-_MAX_LINES = 500
+
+# Size limits
+_MAX_BYTES  = 50_000
+_MAX_LINES  = 500
+_MAX_GREP_MATCHES = 50
 
 
-async def file_read(path: str, max_lines: int | None = None) -> str:
+def _is_project_allowed(resolved: Path) -> bool:
-    """Read a local file and return its contents as a string.
-
-    Only files within allowed directories can be read:
-      ~/agents_sync/, ~/OSIT_dev/, ~/DgrZone_Nextcloud/, ~/OSIT_Nextcloud/
-
-    Args:
-        path:      Absolute or home-relative path to the file (e.g. ~/agents_sync/CLAUDE.md).
-        max_lines: Optional line limit (default 500, hard cap). Use for large files.
-
-    Returns the file contents (truncated if over the size limit), or an error message.
-    """
-    return await asyncio.to_thread(_sync_file_read, path, max_lines)
-
-
-def _sync_file_read(path: str, max_lines: int | None) -> str:
-    # Expand ~ and resolve to absolute path
     try:
-        resolved = Path(path).expanduser().resolve()
+        resolved.relative_to(_PROJECT_ROOT)
-    except Exception as e:
+        return True
-        return f"Invalid path: {e}"
+    except ValueError:
-
+        return False
-    # Security check — must be under an allowed root
-    if not _is_allowed(resolved):
-        allowed_str = ", ".join(str(r) for r in _ALLOWED_ROOTS)
-        return (
-            f"Access denied: {resolved}\n"
-            f"Allowed directories: {allowed_str}"
-        )
-
-    if not resolved.exists():
-        return f"File not found: {resolved}"
-
-    if not resolved.is_file():
-        # If it's a directory, list its contents instead
-        try:
-            entries = sorted(resolved.iterdir())
-            names = [e.name + ("/" if e.is_dir() else "") for e in entries[:100]]
-            return f"Directory listing for {resolved}:\n" + "\n".join(names)
-        except Exception as e:
-            return f"Cannot list directory: {e}"
-
-    # Read the file
-    try:
-        raw = resolved.read_bytes()
-    except Exception as e:
-        return f"Read error: {e}"
-
-    # Binary files
-    try:
-        text = raw.decode("utf-8")
-    except UnicodeDecodeError:
-        return f"Binary file (not readable as text): {resolved}  [{len(raw)} bytes]"
-
-    # Apply line limit
-    limit = min(max_lines or _MAX_LINES, _MAX_LINES)
-    lines = text.splitlines()
-    truncated = False
-
-    if len(lines) > limit:
-        lines = lines[:limit]
-        truncated = True
-
-    # Apply byte cap as a final safety net
-    result = "\n".join(lines)
-    if len(result) > _MAX_BYTES:
-        result = result[:_MAX_BYTES]
-        truncated = True
-
-    if truncated:
-        result += f"\n\n… [truncated — file has {len(text.splitlines())} lines total]"
-
-    return result
 
 
 def _is_allowed(resolved: Path) -> bool:
-    """Check that resolved path is under one of the allowed roots."""
     for root in _ALLOWED_ROOTS:
         try:
             resolved.relative_to(root)
@@ -125,12 +82,6 @@ def _is_allowed(resolved: Path) -> bool:
     return False
 
 
-# Write is restricted to a tighter set of paths to limit blast radius.
-_WRITE_ROOTS: list[Path] = [
-    Path.home() / "agents_sync",
-]
-
-
 def _is_write_allowed(resolved: Path) -> bool:
     for root in _WRITE_ROOTS:
         try:
@@ -138,63 +89,321 @@ def _is_write_allowed(resolved: Path) -> bool:
             return True
         except ValueError:
             continue
-    # Also allow the Cortex home/ directory (persona memory, tasks, etc.)
     try:
         from config import settings
-        cortex_home = settings.home_root()
+        resolved.relative_to(settings.home_root())
-        resolved.relative_to(cortex_home)
         return True
     except (ValueError, Exception):
         pass
     return False
 
 
-async def file_list(path: str) -> str:
+# ── Shared implementations ────────────────────────────────────────────────────
-    """List the contents of a directory.
 
-    Returns names of files and subdirectories with type indicators (/ for dirs).
+def _read_impl(path_str: str, offset: int | None, max_lines: int | None, is_allowed_fn) -> str:
-    Same allow-list as file_read.
-    """
-    return await asyncio.to_thread(_sync_file_list, path)
-
-
-def _sync_file_list(path: str) -> str:
     try:
-        resolved = Path(path).expanduser().resolve()
+        resolved = Path(path_str).expanduser().resolve()
     except Exception as e:
         return f"Invalid path: {e}"
 
-    if not _is_allowed(resolved):
+    if not is_allowed_fn(resolved):
-        allowed_str = ", ".join(str(r) for r in _ALLOWED_ROOTS)
+        return f"Access denied: {resolved}"
-        return f"Access denied: {resolved}\nAllowed directories: {allowed_str}"
+
+    if not resolved.exists():
+        return f"File not found: {resolved}"
+
+    if not resolved.is_file():
+        try:
+            entries = sorted(resolved.iterdir())
+            names = [e.name + ("/" if e.is_dir() else "") for e in entries[:100]]
+            return f"Directory listing for {resolved}:\n" + "\n".join(names)
+        except Exception as e:
+            return f"Cannot list directory: {e}"
+
+    try:
+        raw = resolved.read_bytes()
+    except Exception as e:
+        return f"Read error: {e}"
+
+    try:
+        text = raw.decode("utf-8")
+    except UnicodeDecodeError:
+        return f"Binary file (not readable as text): {resolved}  [{len(raw)} bytes]"
+
+    all_lines = text.splitlines()
+    total = len(all_lines)
+
+    # offset is 1-based; default = start of file
+    start = max(0, (offset or 1) - 1)
+    working = all_lines[start:]
+
+    limit = min(max_lines or _MAX_LINES, _MAX_LINES)
+    truncated = False
+    if len(working) > limit:
+        working = working[:limit]
+        truncated = True
+
+    result = "\n".join(working)
+    if len(result) > _MAX_BYTES:
+        result = result[:_MAX_BYTES]
+        truncated = True
+
+    end_line = start + len(working)
+    header = f"[Lines {start + 1}–{end_line} of {total}]\n" if (start > 0 or truncated) else ""
+    trailer = f"\n\n… [truncated — file has {total} lines; use offset={end_line + 1} to read more]" if truncated else ""
+
+    return header + result + trailer
+
+
+def _list_impl(path_str: str, is_allowed_fn) -> str:
+    try:
+        resolved = Path(path_str).expanduser().resolve()
+    except Exception as e:
+        return f"Invalid path: {e}"
+
+    if not is_allowed_fn(resolved):
+        return f"Access denied: {resolved}"
 
     if not resolved.exists():
         return f"Path not found: {resolved}"
 
     if resolved.is_file():
-        return f"{resolved} is a file, not a directory. Use file_read to read it."
+        return f"{resolved} is a file. Use file_read / project_file_read to read it."
 
     try:
         entries = sorted(resolved.iterdir(), key=lambda e: (e.is_file(), e.name.lower()))
         lines = []
         for e in entries[:200]:
-            suffix = "/" if e.is_dir() else f"  ({e.stat().st_size} bytes)" if e.is_file() else ""
+            if e.is_dir():
+                suffix = "/"
+            else:
+                try:
+                    st = e.stat()
+                    mtime = datetime.fromtimestamp(st.st_mtime).strftime("%Y-%m-%d %H:%M")
+                    suffix = f"  ({st.st_size:,} B, {mtime})"
+                except Exception:
+                    suffix = ""
             lines.append(f"{e.name}{suffix}")
         result = "\n".join(lines)
         if len(entries) > 200:
-            result += f"\n… ({len(entries) - 200} more entries not shown)"
+            result += f"\n… ({len(entries) - 200} more not shown)"
         return f"Contents of {resolved}:\n\n{result}"
     except Exception as e:
         return f"Cannot list directory: {e}"
 
 
-async def file_write(path: str, content: str, mode: str = "overwrite") -> str:
+# ── Project-scoped tools ──────────────────────────────────────────────────────
-    """Write content to a file.
 
-    mode: 'overwrite' (default) replaces the file; 'append' adds to the end.
+async def project_file_read(path: str, offset: int | None = None, max_lines: int | None = None) -> str:
-    Write-allowed paths: ~/agents_sync/ and the Cortex home/ directory.
+    """Read a file within the Cortex project directory, with optional line range."""
-    Parent directories are created if they don't exist.
+    return await asyncio.to_thread(_read_impl, path, offset, max_lines, _is_project_allowed)
-    """
+
+
+async def project_file_list(path: str) -> str:
+    """List directory contents within the Cortex project directory, with sizes and timestamps."""
+    return await asyncio.to_thread(_list_impl, path, _is_project_allowed)
+
+
+async def file_stat(path: str) -> str:
+    """Return metadata for a file or directory: type, size, modified time, line count."""
+    return await asyncio.to_thread(_sync_file_stat, path)
+
+
+def _sync_file_stat(path_str: str) -> str:
+    try:
+        resolved = Path(path_str).expanduser().resolve()
+    except Exception as e:
+        return f"Invalid path: {e}"
+
+    if not _is_project_allowed(resolved):
+        return f"Access denied: {resolved}\nProject root: {_PROJECT_ROOT}"
+
+    if not resolved.exists():
+        return f"Path not found: {resolved}"
+
+    try:
+        st = resolved.stat()
+    except Exception as e:
+        return f"Cannot stat: {e}"
+
+    modified = datetime.fromtimestamp(st.st_mtime).strftime("%Y-%m-%d %H:%M:%S")
+    lines = [
+        f"Path:     {resolved}",
+        f"Type:     {'directory' if resolved.is_dir() else 'file'}",
+        f"Size:     {st.st_size:,} bytes",
+        f"Modified: {modified}",
+    ]
+
+    if resolved.is_file():
+        try:
+            raw = resolved.read_bytes()
+            if b'\x00' not in raw[:1024]:
+                lines.append(f"Lines:    {len(raw.decode('utf-8', errors='replace').splitlines())}")
+        except Exception:
+            pass
+    elif resolved.is_dir():
+        try:
+            entries = list(resolved.iterdir())
+            n_files = sum(1 for e in entries if e.is_file())
+            n_dirs  = sum(1 for e in entries if e.is_dir())
+            lines.append(f"Contents: {n_files} file(s), {n_dirs} subdirector{'y' if n_dirs == 1 else 'ies'}")
+        except Exception:
+            pass
+
+    return "\n".join(lines)
+
+
+async def file_grep(path: str, pattern: str, context_lines: int = 2, recursive: bool = True) -> str:
+    """Search for a regex pattern in a file or directory, returning matching lines with context."""
+    return await asyncio.to_thread(_sync_file_grep, path, pattern, context_lines, recursive)
+
+
+def _sync_file_grep(path_str: str, pattern: str, context_lines: int, recursive: bool) -> str:
+    try:
+        resolved = Path(path_str).expanduser().resolve()
+    except Exception as e:
+        return f"Invalid path: {e}"
+
+    if not _is_project_allowed(resolved):
+        return f"Access denied: {resolved}\nProject root: {_PROJECT_ROOT}"
+
+    if not resolved.exists():
+        return f"Path not found: {resolved}"
+
+    try:
+        regex = re.compile(pattern, re.IGNORECASE)
+    except re.error as e:
+        return f"Invalid regex pattern: {e}"
+
+    ctx = max(0, min(context_lines, 5))
+
+    if resolved.is_file():
+        files_to_search = [resolved]
+    elif recursive:
+        files_to_search = sorted(f for f in resolved.rglob("*") if f.is_file())
+    else:
+        files_to_search = sorted(f for f in resolved.iterdir() if f.is_file())
+
+    total_matches = 0
+    sections: list[str] = []
+    capped = False
+
+    for fp in files_to_search:
+        if total_matches >= _MAX_GREP_MATCHES:
+            capped = True
+            break
+        try:
+            raw = fp.read_bytes()
+        except OSError:
+            continue
+        if b'\x00' in raw[:1024]:
+            continue  # skip binary
+        try:
+            text = raw.decode("utf-8", errors="replace")
+        except Exception:
+            continue
+
+        file_lines = text.splitlines()
+        match_indices = [i for i, line in enumerate(file_lines) if regex.search(line)]
+        if not match_indices:
+            continue
+
+        total_matches += len(match_indices)
+
+        try:
+            label = str(fp.relative_to(_PROJECT_ROOT))
+        except ValueError:
+            label = str(fp)
+
+        file_output = [f"── {label} ──"]
+        printed: set[int] = set()
+
+        for mi in match_indices:
+            start = max(0, mi - ctx)
+            end   = min(len(file_lines), mi + ctx + 1)
+            if printed and start > max(printed) + 1:
+                file_output.append("  ···")
+            for j in range(start, end):
+                if j not in printed:
+                    marker = "►" if j == mi else " "
+                    file_output.append(f"  {j + 1:4d}{marker} {file_lines[j]}")
+                    printed.add(j)
+
+        sections.append("\n".join(file_output))
+
+    if not sections:
+        return f"No matches for '{pattern}' in {resolved}"
+
+    cap_note = f" (capped at {_MAX_GREP_MATCHES})" if capped else ""
+    header   = f"grep '{pattern}' — {total_matches} match(es){cap_note}:"
+    return header + "\n\n" + "\n\n".join(sections)
+
+
+async def file_syntax_check(path: str) -> str:
+    """Check syntax of a Python (.py) or JSON (.json) file."""
+    return await asyncio.to_thread(_sync_file_syntax_check, path)
+
+
+def _sync_file_syntax_check(path_str: str) -> str:
+    try:
+        resolved = Path(path_str).expanduser().resolve()
+    except Exception as e:
+        return f"Invalid path: {e}"
+
+    if not _is_project_allowed(resolved):
+        return f"Access denied: {resolved}\nProject root: {_PROJECT_ROOT}"
+
+    if not resolved.exists():
+        return f"File not found: {resolved}"
+
+    if not resolved.is_file():
+        return f"Not a file: {resolved}"
+
+    suffix = resolved.suffix.lower()
+
+    if suffix == ".py":
+        try:
+            result = subprocess.run(
+                ["python3", "-m", "py_compile", str(resolved)],
+                capture_output=True, text=True, timeout=15,
+            )
+            if result.returncode == 0:
+                return f"OK — {resolved.name}: syntax valid"
+            err = (result.stderr or result.stdout).strip()
+            return f"Syntax error in {resolved.name}:\n{err}"
+        except subprocess.TimeoutExpired:
+            return f"Timeout running py_compile on {resolved.name}"
+        except Exception as e:
+            return f"Error: {e}"
+
+    elif suffix == ".json":
+        try:
+            text = resolved.read_text(encoding="utf-8")
+            json.loads(text)
+            return f"OK — {resolved.name}: valid JSON"
+        except json.JSONDecodeError as e:
+            return f"JSON error in {resolved.name}: {e}"
+        except Exception as e:
+            return f"Error reading {resolved.name}: {e}"
+
+    else:
+        return f"Syntax check not supported for '{suffix}' files. Supported: .py, .json"
+
+
+# ── System-scoped tools ───────────────────────────────────────────────────────
+
+async def file_read(path: str, offset: int | None = None, max_lines: int | None = None) -> str:
+    """Read a local file from the broader system. Allowed: ~/agents_sync/, ~/OSIT_dev/, etc. ADMIN ONLY."""
+    return await asyncio.to_thread(_read_impl, path, offset, max_lines, _is_allowed)
+
+
+async def file_list(path: str) -> str:
+    """List directory contents from the broader system. ADMIN ONLY."""
+    return await asyncio.to_thread(_list_impl, path, _is_allowed)
+
+
+async def file_write(path: str, content: str, mode: str = "overwrite") -> str:
+    """Write or append content to a file. Write roots: ~/agents_sync/ and Cortex home/. ADMIN ONLY."""
     return await asyncio.to_thread(_sync_file_write, path, content, mode)
 
 
@@ -227,16 +436,13 @@ def _sync_file_write(path: str, content: str, mode: str) -> str:
         return f"Write error: {e}"
 
 
+# ── Session tools ─────────────────────────────────────────────────────────────
+
 _SEARCH_EXCERPT_CHARS = 150
 
 
 async def session_read(date: str) -> str:
-    """Read a full session log by date (YYYY-MM-DD).
+    """Read a full session log by date (YYYY-MM-DD)."""
-
-    Returns the complete session log for that date. If the date is not found,
-    lists the most recent available dates instead.
-    Only reads the current user's own sessions (per-persona isolation via ContextVars).
-    """
     return await asyncio.to_thread(_sync_session_read, date.strip())
 
 
@@ -259,11 +465,7 @@ def _sync_session_read(date: str) -> str:
 
 
 async def session_search(query: str, limit: int = 5) -> str:
-    """Search past session logs for a keyword or phrase.
+    """Search past session logs for a keyword or phrase."""
-
-    Returns up to `limit` matching excerpts with session dates, newest first.
-    Only searches the current user's own sessions (per-persona isolation via ContextVars).
-    """
     return await asyncio.to_thread(_sync_session_search, query, limit)
 
 
@@ -273,7 +475,7 @@ def _sync_session_search(query: str, limit: int) -> str:
     if not sessions_dir.exists():
         return "No session logs found."
 
-    limit = max(1, min(limit, 20))
+    limit   = max(1, min(limit, 20))
     pattern = re.compile(re.escape(query), re.IGNORECASE)
     session_files = sorted(sessions_dir.glob("*.md"), reverse=True)
 
@@ -288,8 +490,8 @@ def _sync_session_search(query: str, limit: int) -> str:
         for m in pattern.finditer(text):
             if len(matches) >= limit:
                 break
-            start = max(0, m.start() - _SEARCH_EXCERPT_CHARS)
+            start   = max(0, m.start() - _SEARCH_EXCERPT_CHARS)
-            end   = min(len(text), m.end() + _SEARCH_EXCERPT_CHARS)
+            end     = min(len(text), m.end() + _SEARCH_EXCERPT_CHARS)
             excerpt = text[start:end].strip()
             if start > 0:
                 excerpt = "…" + excerpt
@@ -299,27 +501,152 @@ def _sync_session_search(query: str, limit: int) -> str:
 
     if not matches:
         return f"No matches for '{query}' across {len(session_files)} session logs."
-
     header = f"Session search: '{query}' — {len(matches)} match(es) across {len(session_files)} logs\n"
     return header + "\n\n".join(matches)
 
 
+# ── Declarations ──────────────────────────────────────────────────────────────
+
 DECLARATIONS = [
+    # Project-scoped
     types.FunctionDeclaration(
-        name="file_read",
+        name="project_file_read",
         description=(
-            "Read a local file and return its contents. "
+            "Read a file within the Cortex project directory (source code, docs, config, persona files). "
-            "Allowed directories: ~/agents_sync/, ~/OSIT_dev/, ~/DgrZone_Nextcloud/, ~/OSIT_Nextcloud/, "
+            "Supports reading a specific line range via offset — use to page through large files "
-            "and the Cortex home/ directory (persona memory, tool audit logs, etc.). "
+            "without re-reading from the top. If given a directory path, returns a listing instead. "
-            "Use this to read documentation, notes, CLAUDE.md files, config references, "
+            "Project root: ~/agents_sync/projects/Cortex_and_Inara_dev/"
-            "or tool audit logs at home/{user}/tool_audit/YYYY-MM-DD.jsonl. "
-            "If given a directory path, returns a directory listing instead."
         ),
         parameters=types.Schema(
             type=types.Type.OBJECT,
             properties={
-                "path": types.Schema(type=types.Type.STRING, description="Absolute or home-relative path to the file (e.g. ~/agents_sync/CLAUDE.md or /home/scott/agents_sync/tasks/01_todo/)"),
+                "path": types.Schema(
-                "max_lines": types.Schema(type=types.Type.INTEGER, description="Optional line limit (default 500)"),
+                    type=types.Type.STRING,
+                    description="Absolute or ~/... path to the file",
+                ),
+                "offset": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Start reading from this line number (1-based). Omit to read from the top.",
+                ),
+                "max_lines": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Maximum lines to return (default 500)",
+                ),
+            },
+            required=["path"],
+        ),
+    ),
+    types.FunctionDeclaration(
+        name="project_file_list",
+        description=(
+            "List files and subdirectories within the Cortex project directory. "
+            "Shows file sizes and modified timestamps. "
+            "Project root: ~/agents_sync/projects/Cortex_and_Inara_dev/"
+        ),
+        parameters=types.Schema(
+            type=types.Type.OBJECT,
+            properties={
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="Absolute or ~/... path to the directory",
+                ),
+            },
+            required=["path"],
+        ),
+    ),
+    types.FunctionDeclaration(
+        name="file_stat",
+        description=(
+            "Get metadata for a file or directory: type, size, modified timestamp, line count (for text files) "
+            "or entry counts (for directories). Use before reading to check recency or size. "
+            "Restricted to the Cortex project directory."
+        ),
+        parameters=types.Schema(
+            type=types.Type.OBJECT,
+            properties={
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="Absolute or ~/... path to the file or directory",
+                ),
+            },
+            required=["path"],
+        ),
+    ),
+    types.FunctionDeclaration(
+        name="file_grep",
+        description=(
+            "Search for a regex pattern in a file or directory, returning matching lines with surrounding "
+            "context. Much more efficient than reading an entire source file — use this to find function "
+            "definitions, variable names, TODO comments, imports, error strings, etc. "
+            "Searches recursively by default. Capped at 50 matches. Skips binary files. "
+            "Case-insensitive. Restricted to the Cortex project directory."
+        ),
+        parameters=types.Schema(
+            type=types.Type.OBJECT,
+            properties={
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="File or directory to search (e.g. ~/agents_sync/projects/Cortex_and_Inara_dev/cortex/)",
+                ),
+                "pattern": types.Schema(
+                    type=types.Type.STRING,
+                    description="Regex pattern to search for (case-insensitive). Examples: 'def ha_', 'import httpx', 'TODO'",
+                ),
+                "context_lines": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Lines of context before/after each match (default 2, max 5)",
+                ),
+                "recursive": types.Schema(
+                    type=types.Type.BOOLEAN,
+                    description="Search subdirectories recursively (default true)",
+                ),
+            },
+            required=["path", "pattern"],
+        ),
+    ),
+    types.FunctionDeclaration(
+        name="file_syntax_check",
+        description=(
+            "Check the syntax of a Python (.py) or JSON (.json) file without executing it. "
+            "Returns OK or the error with line number. "
+            "Use after editing a file before restarting Cortex. "
+            "Restricted to the Cortex project directory."
+        ),
+        parameters=types.Schema(
+            type=types.Type.OBJECT,
+            properties={
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="Path to the .py or .json file to check",
+                ),
+            },
+            required=["path"],
+        ),
+    ),
+    # System-scoped
+    types.FunctionDeclaration(
+        name="file_read",
+        description=(
+            "Read a local file from the broader system (~/agents_sync/, ~/OSIT_dev/, ~/DgrZone_Nextcloud/, "
+            "~/OSIT_Nextcloud/, Cortex home/). Supports offset for reading specific line ranges. "
+            "For files within the Cortex project, prefer project_file_read instead. "
+            "ADMIN ONLY."
+        ),
+        parameters=types.Schema(
+            type=types.Type.OBJECT,
+            properties={
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="Absolute or ~/... path to the file",
+                ),
+                "offset": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Start reading from this line number (1-based)",
+                ),
+                "max_lines": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Maximum lines to return (default 500)",
+                ),
             },
             required=["path"],
         ),
@@ -327,14 +654,18 @@ DECLARATIONS = [
     types.FunctionDeclaration(
         name="file_list",
         description=(
-            "List the files and subdirectories in a directory. "
+            "List files and subdirectories from the broader system. "
-            "Allowed paths: ~/agents_sync/, ~/OSIT_dev/, ~/DgrZone_Nextcloud/, ~/OSIT_Nextcloud/. "
+            "Shows sizes and modified timestamps. "
+            "Allowed: ~/agents_sync/, ~/OSIT_dev/, ~/DgrZone_Nextcloud/, ~/OSIT_Nextcloud/. "
             "ADMIN ONLY."
         ),
         parameters=types.Schema(
             type=types.Type.OBJECT,
             properties={
-                "path": types.Schema(type=types.Type.STRING, description="Absolute or home-relative path to the directory"),
+                "path": types.Schema(
+                    type=types.Type.STRING,
+                    description="Absolute or ~/... path to the directory",
+                ),
             },
             required=["path"],
         ),
@@ -350,9 +681,18 @@ DECLARATIONS = [
         parameters=types.Schema(
             type=types.Type.OBJECT,
             properties={
-                "path": types.Schema(type=types.Type.STRING, description="Absolute or home-relative path to write to"),
+                "path": types.Schema(
-                "content": types.Schema(type=types.Type.STRING, description="Content to write"),
+                    type=types.Type.STRING,
-                "mode": types.Schema(type=types.Type.STRING, description="'overwrite' (default, replaces file) or 'append' (adds to end)"),
+                    description="Absolute or ~/... path to write to",
+                ),
+                "content": types.Schema(
+                    type=types.Type.STRING,
+                    description="Content to write",
+                ),
+                "mode": types.Schema(
+                    type=types.Type.STRING,
+                    description="'overwrite' (default, replaces file) or 'append' (adds to end)",
+                ),
             },
             required=["path", "content"],
         ),
@@ -360,15 +700,18 @@ DECLARATIONS = [
     types.FunctionDeclaration(
         name="session_read",
         description=(
-            "Read a full session log by date (YYYY-MM-DD). Returns the complete conversation "
+            "Read a full conversation session log by date (YYYY-MM-DD). "
-            "from that session — useful for continuity, recalling decisions, or reviewing "
+            "Useful for continuity and recalling past decisions. "
-            "what was discussed on a specific day. If the date is not found, lists available dates. "
+            "If the date is not found, lists available dates. "
             "Only reads this user's own sessions."
         ),
         parameters=types.Schema(
             type=types.Type.OBJECT,
             properties={
-                "date": types.Schema(type=types.Type.STRING, description="Date in YYYY-MM-DD format (e.g. '2026-05-08')"),
+                "date": types.Schema(
+                    type=types.Type.STRING,
+                    description="Date in YYYY-MM-DD format (e.g. '2026-05-08')",
+                ),
             },
             required=["date"],
         ),
@@ -377,16 +720,20 @@ DECLARATIONS = [
         name="session_search",
         description=(
             "Search past conversation session logs for a keyword or phrase. "
-            "Use this to recall what was discussed in previous sessions — "
-            "e.g. 'what did we decide about X?', 'when did we set up Y?'. "
             "Returns matching excerpts with session dates, newest first. "
             "Only searches this user's own sessions."
         ),
         parameters=types.Schema(
             type=types.Type.OBJECT,
             properties={
-                "query": types.Schema(type=types.Type.STRING, description="Keyword or phrase to search for"),
+                "query": types.Schema(
-                "limit": types.Schema(type=types.Type.INTEGER, description="Max results to return (default 5, max 20)"),
+                    type=types.Type.STRING,
+                    description="Keyword or phrase to search for",
+                ),
+                "limit": types.Schema(
+                    type=types.Type.INTEGER,
+                    description="Max results to return (default 5, max 20)",
+                ),
             },
             required=["query"],
         ),